/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#include "enzyme.h"

namespace bol{
Enzyme::Enzyme()
{
}

  
Enzyme::~Enzyme()
{
}

///@todo make something more clever than putting brute force for size limits...
void Enzyme::cleave(const Peptide& src, vector<Peptide>&vpept){
  vpept.clear();
  vector<int> vpos;
  cleavePositions(src, vpos);
  vpos.push_back(src.length()-1);
  int cut=1;
  for (vector<int>::const_iterator it=vpos.begin(); it<vpos.end(); it++){
    int l=*it-cut;
    if(l>=6 && l<=30){
       vpept.push_back(Peptide(src, cut, *it-cut));
    }
    cut=*it;
  }
}
}
